Wood Transcriptome Profiling Identifies Critical Pathway Genes of Secondary Wall Biosynthesis and Novel Regulators for Vascular Cambium Development in Populus.
Identifieur interne : 000635 ( Main/Exploration ); précédent : 000634; suivant : 000636Wood Transcriptome Profiling Identifies Critical Pathway Genes of Secondary Wall Biosynthesis and Novel Regulators for Vascular Cambium Development in Populus.
Auteurs : Min-Ha Kim [Corée du Sud] ; Jin-Seong Cho [Corée du Sud] ; Hyung-Woo Jeon [Corée du Sud, Australie] ; Kanidta Sangsawang [Corée du Sud] ; Donghwan Shim [Corée du Sud] ; Young-Im Choi [Corée du Sud] ; Eung-Jun Park [Corée du Sud] ; Hyoshin Lee [Corée du Sud] ; Jae-Heung Ko [Corée du Sud]Source :
- Genes [ 2073-4425 ] ; 2019.
Descripteurs français
- KwdFr :
- Cambium (croissance et développement), Cambium (génétique), Facteurs de transcription (génétique), Facteurs de transcription (métabolisme), Lignine (biosynthèse), Lignine (génétique), Paroi cellulaire (génétique), Paroi cellulaire (métabolisme), Populus (croissance et développement), Populus (génétique), Protéines végétales (génétique), Protéines végétales (métabolisme), Tiges de plante (croissance et développement), Tiges de plante (génétique), Transcriptome (MeSH), Xylanes (biosynthèse), Xylanes (génétique), Xylème (croissance et développement), Xylème (génétique).
- MESH :
- biosynthèse : Lignine, Xylanes.
- croissance et développement : Cambium, Populus, Tiges de plante, Xylème.
- génétique : Cambium, Facteurs de transcription, Lignine, Paroi cellulaire, Populus, Protéines végétales, Tiges de plante, Xylanes, Xylème.
- métabolisme : Facteurs de transcription, Paroi cellulaire, Protéines végétales.
- Transcriptome.
English descriptors
- KwdEn :
- Cambium (genetics), Cambium (growth & development), Cell Wall (genetics), Cell Wall (metabolism), Lignin (biosynthesis), Lignin (genetics), Plant Proteins (genetics), Plant Proteins (metabolism), Plant Stems (genetics), Plant Stems (growth & development), Populus (genetics), Populus (growth & development), Transcription Factors (genetics), Transcription Factors (metabolism), Transcriptome (MeSH), Xylans (biosynthesis), Xylans (genetics), Xylem (genetics), Xylem (growth & development).
- MESH :
- chemical , biosynthesis : Lignin, Xylans.
- genetics : Cambium, Cell Wall, Lignin, Plant Proteins, Plant Stems, Populus, Transcription Factors, Xylans, Xylem.
- growth & development : Cambium, Plant Stems, Populus, Xylem.
- metabolism : Cell Wall, Plant Proteins, Transcription Factors.
- Transcriptome.
Abstract
Wood, the most abundant biomass on Earth, is composed of secondary xylem differentiated from vascular cambium. However, the underlying molecular mechanisms of wood formation remain largely unclear. To gain insight into wood formation, we performed a series of wood-forming tissue-specific transcriptome analyses from a hybrid poplar (Populus alba × P. glandulosa, clone BH) using RNA-seq. Together with shoot apex and leaf tissue, cambium and xylem tissues were isolated from vertical stem segments representing a gradient of secondary growth developmental stages (i.e., immature, intermediate, and mature stem). In a comparative transcriptome analysis of the 'developing xylem' and 'leaf' tissue, we could identify critical players catalyzing each biosynthetic step of secondary wall components (e.g., cellulose, xylan, and lignin). Several candidate genes involved in the initiation of vascular cambium formation were found via a co-expression network analysis using abundantly expressed genes in the 'intermediate stem-derived cambium' tissue. We found that transgenic Arabidopsis plants overexpressing the PtrHAM4-1, a GRAS family transcription factor, resulted in a significant increase of vascular cambium development. This phenotype was successfully reproduced in the transgenic poplars overexpressing the PtrHAM4-1. Taken together, our results may serve as a springboard for further research to unravel the molecular mechanism of wood formation, one of the most important biological processes on this planet.
DOI: 10.3390/genes10090690
PubMed: 31500311
PubMed Central: PMC6770981
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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wicri:level="1"><nlm:affiliation>Department of Plant & Environmental New Resources, Kyung Hee University, Yongin 446-701, Korea. jinsung3932@gmail.com.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Department of Plant & Environmental New Resources, Kyung Hee University, Yongin 446-701</wicri:regionArea><wicri:noRegion>Yongin 446-701</wicri:noRegion></affiliation></author><author><name sortKey="Jeon, Hyung Woo" sort="Jeon, Hyung Woo" uniqKey="Jeon H" first="Hyung-Woo" last="Jeon">Hyung-Woo Jeon</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant & Environmental New Resources, Kyung Hee University, Yongin 446-701, Korea. hyungwoojeon@gmail.com.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Department of Plant & Environmental New Resources, Kyung Hee University, Yongin 446-701</wicri:regionArea><wicri:noRegion>Yongin 446-701</wicri:noRegion></affiliation><affiliation wicri:level="4"><nlm:affiliation>School of Life and Environmental Sciences, The University of Sydney, Camperdown, NSW 2006, Australia. hyungwoojeon@gmail.com.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>School of Life and Environmental Sciences, The University of Sydney, Camperdown, NSW 2006</wicri:regionArea><orgName type="university">Université de Sydney</orgName><placeName><settlement type="city">Sydney</settlement><region type="état">Nouvelle-Galles du Sud</region></placeName></affiliation></author><author><name sortKey="Sangsawang, Kanidta" sort="Sangsawang, Kanidta" uniqKey="Sangsawang K" first="Kanidta" last="Sangsawang">Kanidta Sangsawang</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant & Environmental New Resources, Kyung Hee University, Yongin 446-701, Korea. kanidtasang@gmail.com.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Department of Plant & Environmental New Resources, Kyung Hee University, Yongin 446-701</wicri:regionArea><wicri:noRegion>Yongin 446-701</wicri:noRegion></affiliation></author><author><name sortKey="Shim, Donghwan" sort="Shim, Donghwan" uniqKey="Shim D" first="Donghwan" last="Shim">Donghwan Shim</name><affiliation wicri:level="1"><nlm:affiliation>Korea Forest Research Institute, Suwon 16631, Korea. shim.donghwan@gmail.com.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Korea Forest Research Institute, Suwon 16631</wicri:regionArea><wicri:noRegion>Suwon 16631</wicri:noRegion></affiliation></author><author><name sortKey="Choi, Young Im" sort="Choi, Young Im" uniqKey="Choi Y" first="Young-Im" last="Choi">Young-Im Choi</name><affiliation wicri:level="1"><nlm:affiliation>Korea Forest Research Institute, Suwon 16631, Korea. yichoi99@korea.kr.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Korea Forest Research Institute, Suwon 16631</wicri:regionArea><wicri:noRegion>Suwon 16631</wicri:noRegion></affiliation></author><author><name sortKey="Park, Eung Jun" sort="Park, Eung Jun" uniqKey="Park E" first="Eung-Jun" last="Park">Eung-Jun Park</name><affiliation wicri:level="1"><nlm:affiliation>Korea Forest Research Institute, Suwon 16631, Korea. pahkej@korea.kr.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Korea Forest Research Institute, Suwon 16631</wicri:regionArea><wicri:noRegion>Suwon 16631</wicri:noRegion></affiliation></author><author><name sortKey="Lee, Hyoshin" sort="Lee, Hyoshin" uniqKey="Lee H" first="Hyoshin" last="Lee">Hyoshin Lee</name><affiliation wicri:level="1"><nlm:affiliation>Korea Forest Research Institute, Suwon 16631, Korea. hyoshinlee@korea.kr.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Korea Forest Research Institute, Suwon 16631</wicri:regionArea><wicri:noRegion>Suwon 16631</wicri:noRegion></affiliation></author><author><name sortKey="Ko, Jae Heung" sort="Ko, Jae Heung" uniqKey="Ko J" first="Jae-Heung" last="Ko">Jae-Heung Ko</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant & Environmental New Resources, Kyung Hee University, Yongin 446-701, Korea. jhko@khu.ac.kr.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Department of Plant & Environmental New Resources, Kyung Hee University, Yongin 446-701</wicri:regionArea><wicri:noRegion>Yongin 446-701</wicri:noRegion></affiliation></author></analytic><series><title level="j">Genes</title><idno type="eISSN">2073-4425</idno><imprint><date when="2019" type="published">2019</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Cambium (genetics)</term><term>Cambium (growth & development)</term><term>Cell Wall (genetics)</term><term>Cell Wall (metabolism)</term><term>Lignin (biosynthesis)</term><term>Lignin (genetics)</term><term>Plant Proteins (genetics)</term><term>Plant Proteins (metabolism)</term><term>Plant Stems (genetics)</term><term>Plant Stems (growth & development)</term><term>Populus (genetics)</term><term>Populus (growth & development)</term><term>Transcription Factors (genetics)</term><term>Transcription Factors (metabolism)</term><term>Transcriptome (MeSH)</term><term>Xylans (biosynthesis)</term><term>Xylans (genetics)</term><term>Xylem (genetics)</term><term>Xylem (growth & development)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Cambium (croissance et développement)</term><term>Cambium (génétique)</term><term>Facteurs de transcription (génétique)</term><term>Facteurs de transcription (métabolisme)</term><term>Lignine (biosynthèse)</term><term>Lignine (génétique)</term><term>Paroi cellulaire (génétique)</term><term>Paroi cellulaire (métabolisme)</term><term>Populus (croissance et développement)</term><term>Populus (génétique)</term><term>Protéines végétales (génétique)</term><term>Protéines végétales (métabolisme)</term><term>Tiges de plante (croissance et développement)</term><term>Tiges de plante (génétique)</term><term>Transcriptome (MeSH)</term><term>Xylanes (biosynthèse)</term><term>Xylanes (génétique)</term><term>Xylème (croissance et développement)</term><term>Xylème (génétique)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="biosynthesis" xml:lang="en"><term>Lignin</term><term>Xylans</term></keywords><keywords scheme="MESH" qualifier="biosynthèse" xml:lang="fr"><term>Lignine</term><term>Xylanes</term></keywords><keywords scheme="MESH" qualifier="croissance et développement" xml:lang="fr"><term>Cambium</term><term>Populus</term><term>Tiges de plante</term><term>Xylème</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Cambium</term><term>Cell Wall</term><term>Lignin</term><term>Plant Proteins</term><term>Plant Stems</term><term>Populus</term><term>Transcription Factors</term><term>Xylans</term><term>Xylem</term></keywords><keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Cambium</term><term>Plant Stems</term><term>Populus</term><term>Xylem</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Cambium</term><term>Facteurs de transcription</term><term>Lignine</term><term>Paroi cellulaire</term><term>Populus</term><term>Protéines végétales</term><term>Tiges de plante</term><term>Xylanes</term><term>Xylème</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Cell Wall</term><term>Plant Proteins</term><term>Transcription Factors</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Facteurs de transcription</term><term>Paroi cellulaire</term><term>Protéines végétales</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Transcriptome</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Transcriptome</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Wood, the most abundant biomass on Earth, is composed of secondary xylem differentiated from vascular cambium. However, the underlying molecular mechanisms of wood formation remain largely unclear. To gain insight into wood formation, we performed a series of wood-forming tissue-specific transcriptome analyses from a hybrid poplar (<i>Populus alba</i> × <i>P. glandulosa</i>, clone BH) using RNA-seq. Together with shoot apex and leaf tissue, cambium and xylem tissues were isolated from vertical stem segments representing a gradient of secondary growth developmental stages (i.e., immature, intermediate, and mature stem). In a comparative transcriptome analysis of the 'developing xylem' and 'leaf' tissue, we could identify critical players catalyzing each biosynthetic step of secondary wall components (e.g., cellulose, xylan, and lignin). Several candidate genes involved in the initiation of vascular cambium formation were found via a co-expression network analysis using abundantly expressed genes in the 'intermediate stem-derived cambium' tissue. We found that transgenic Arabidopsis plants overexpressing the <i>PtrHAM4-1</i>, a GRAS family transcription factor, resulted in a significant increase of vascular cambium development. This phenotype was successfully reproduced in the transgenic poplars overexpressing the <i>PtrHAM4-1</i>. Taken together, our results may serve as a springboard for further research to unravel the molecular mechanism of wood formation, one of the most important biological processes on this planet.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">31500311</PMID><DateCompleted><Year>2020</Year><Month>01</Month><Day>16</Day></DateCompleted><DateRevised><Year>2020</Year><Month>01</Month><Day>16</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">2073-4425</ISSN><JournalIssue CitedMedium="Internet"><Volume>10</Volume><Issue>9</Issue><PubDate><Year>2019</Year><Month>09</Month><Day>07</Day></PubDate></JournalIssue><Title>Genes</Title><ISOAbbreviation>Genes (Basel)</ISOAbbreviation></Journal><ArticleTitle>Wood Transcriptome Profiling Identifies Critical Pathway Genes of Secondary Wall Biosynthesis and Novel Regulators for Vascular Cambium Development in <i>Populus</i>.</ArticleTitle><ELocationID EIdType="pii" ValidYN="Y">E690</ELocationID><ELocationID EIdType="doi" ValidYN="Y">10.3390/genes10090690</ELocationID><Abstract><AbstractText>Wood, the most abundant biomass on Earth, is composed of secondary xylem differentiated from vascular cambium. However, the underlying molecular mechanisms of wood formation remain largely unclear. To gain insight into wood formation, we performed a series of wood-forming tissue-specific transcriptome analyses from a hybrid poplar (<i>Populus alba</i> × <i>P. glandulosa</i>, clone BH) using RNA-seq. Together with shoot apex and leaf tissue, cambium and xylem tissues were isolated from vertical stem segments representing a gradient of secondary growth developmental stages (i.e., immature, intermediate, and mature stem). In a comparative transcriptome analysis of the 'developing xylem' and 'leaf' tissue, we could identify critical players catalyzing each biosynthetic step of secondary wall components (e.g., cellulose, xylan, and lignin). Several candidate genes involved in the initiation of vascular cambium formation were found via a co-expression network analysis using abundantly expressed genes in the 'intermediate stem-derived cambium' tissue. We found that transgenic Arabidopsis plants overexpressing the <i>PtrHAM4-1</i>, a GRAS family transcription factor, resulted in a significant increase of vascular cambium development. This phenotype was successfully reproduced in the transgenic poplars overexpressing the <i>PtrHAM4-1</i>. Taken together, our results may serve as a springboard for further research to unravel the molecular mechanism of wood formation, one of the most important biological processes on this planet.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Kim</LastName><ForeName>Min-Ha</ForeName><Initials>MH</Initials><AffiliationInfo><Affiliation>Department of Plant & Environmental New Resources, Kyung Hee University, Yongin 446-701, Korea. minha123@khu.ac.kr.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cho</LastName><ForeName>Jin-Seong</ForeName><Initials>JS</Initials><AffiliationInfo><Affiliation>Department of Plant & Environmental New Resources, Kyung Hee University, Yongin 446-701, Korea. jinsung3932@gmail.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jeon</LastName><ForeName>Hyung-Woo</ForeName><Initials>HW</Initials><Identifier Source="ORCID">0000-0001-7587-6689</Identifier><AffiliationInfo><Affiliation>Department of Plant & Environmental New Resources, Kyung Hee University, Yongin 446-701, Korea. hyungwoojeon@gmail.com.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>School of Life and Environmental Sciences, The University of Sydney, Camperdown, NSW 2006, Australia. hyungwoojeon@gmail.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sangsawang</LastName><ForeName>Kanidta</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>Department of Plant & Environmental New Resources, Kyung Hee University, Yongin 446-701, Korea. kanidtasang@gmail.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Shim</LastName><ForeName>Donghwan</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>Korea Forest Research Institute, Suwon 16631, Korea. shim.donghwan@gmail.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Choi</LastName><ForeName>Young-Im</ForeName><Initials>YI</Initials><AffiliationInfo><Affiliation>Korea Forest Research Institute, Suwon 16631, Korea. yichoi99@korea.kr.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Park</LastName><ForeName>Eung-Jun</ForeName><Initials>EJ</Initials><AffiliationInfo><Affiliation>Korea Forest Research Institute, Suwon 16631, Korea. pahkej@korea.kr.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lee</LastName><ForeName>Hyoshin</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>Korea Forest Research Institute, Suwon 16631, Korea. hyoshinlee@korea.kr.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ko</LastName><ForeName>Jae-Heung</ForeName><Initials>JH</Initials><Identifier Source="ORCID">0000-0002-4035-874X</Identifier><AffiliationInfo><Affiliation>Department of Plant & Environmental New Resources, Kyung Hee University, Yongin 446-701, Korea. jhko@khu.ac.kr.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2019</Year><Month>09</Month><Day>07</Day></ArticleDate></Article><MedlineJournalInfo><Country>Switzerland</Country><MedlineTA>Genes (Basel)</MedlineTA><NlmUniqueID>101551097</NlmUniqueID><ISSNLinking>2073-4425</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010940">Plant Proteins</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D014157">Transcription Factors</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D014990">Xylans</NameOfSubstance></Chemical><Chemical><RegistryNumber>9005-53-2</RegistryNumber><NameOfSubstance 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Donghwan" sort="Shim, Donghwan" uniqKey="Shim D" first="Donghwan" last="Shim">Donghwan Shim</name></country><country name="Australie"><region name="Nouvelle-Galles du Sud"><name sortKey="Jeon, Hyung Woo" sort="Jeon, Hyung Woo" uniqKey="Jeon H" first="Hyung-Woo" last="Jeon">Hyung-Woo Jeon</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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